BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008H03LP1|AL425936
(757 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1152 870 0.0
>3x_Contig1152
Length = 5366
Score = 870 bits (436), Expect = 0.0
Identities = 670/753 (88%)
Strand = Plus / Minus
Query: 5 aaagatacccgaaaccgcaattctatcaccagcacgacacgaatcaaccagctcatcata 64
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 aaagatacctgaaacctcaattctatcaccagcacgacacgaatcaaccagctcatcata 3206
Query: 65 tacacatagggaaacagagtgtggagtttgtccatcagggactagatcaggcgtctcctg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 3205 tacacatagggaaacagagtgtggagtttgtccatcagggactagatcaggcgtttcttg 3146
Query: 125 gaaccttatcacctgtctgtcttggaaagtgcacccattgtgaaccaaaaccatggagtt 184
||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 3145 taactttatcacttgtctgtcttggaaagtgcacctattgtgaactaaaaccatggagtt 3086
Query: 185 tgggcgattacagaccactctgggacatcccaccgggtcctgaataaaaccacgancgav 244
||||| ||||||||||||||||||||||| ||| || || ||||||| ||||||| |||
Sbjct: 3085 tgggctattacagaccactctgggacatctcactggttcttgaataataccacgatcgat 3026
Query: 245 ctcaacctccacagtatgattgcatacgttacatttgaaaaaagcaacacccatatccgg 304
|||||| || |||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct: 3025 ctcaacttctacagtatgattgcatacgttacatttgaaaaatgcaacactcatatctgg 2966
Query: 305 gaaaacaggggtggatcccagaaccaaacctttgacacccaccaatttatcaatatcatt 364
|| || ||| ||||||| ||||| |||||||||| || |||||||||||||||||||||
Sbjct: 2965 gataataggtgtggatcttagaactaaacctttgatactcaccaatttatcaatatcatt 2906
Query: 365 aggatcaagcccccccacacccyttccgggttccacatcagaagggcccaccttgaacaa 424
||||| |||| | | || |||| || || |||||||| | | || | ||| ||||||||
Sbjct: 2905 aggattaagctctctcataccctttttggtttccacattatatggtctcactttgaacaa 2846
Query: 425 cttcgattcaatttcattcaagtaactccccaacccaccaacaagtgccaaggagaccat 484
|||||||||||||||||||||||||||| | |||||| | ||||||| ||||| |||||
Sbjct: 2845 cttcgattcaatttcattcaagtaactctctaacccattatcaagtgctaaggataccat 2786
Query: 485 acaaaccccaacagtgtgagccacaacagcsacaatcgcccgagggtaanagagaatccg 544
|||| | |||||| ||| ||| || ||| | ||| | |||||||| |||||||| |
Sbjct: 2785 acaatctttaacagtttgatccataatagctataatttcttgagggtaatagagaatctg 2726
Query: 545 atgaaacaactttgcaggatgtgtagmagccagnvaacctctgagatcaaggggcaagtt 604
||||||||||||| ||| |||| || |||||| || ||||| ||||||| ||||||
Sbjct: 2725 atgaaacaacttttcagtatgtttataagccagtaaatttctgatatcaaggttcaagtt 2666
Query: 605 tgaagtaccgagttgtctcwtttgattcaattgattcacataatacagctcttggtctgt 664
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2665 tgaagtaccgagttgtctcatttgattcaattgattcacataatacagctcttggtctgt 2606
Query: 665 tgtttcgttgatkaaaatctcctgatcatctagctcctttctatatttcaacttgaaaga 724
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2605 tgtttcgttgatgaaaatctcctgatcatctagctcctttctatatttcaacttgaaaga 2546
Query: 725 catcaaaaattctctgwaactgttaccacactc 757
|||||||||||||||| ||||||||||||||||
Sbjct: 2545 catcaaaaattctctgaaactgttaccacactc 2513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4432
Number of Sequences: 1807
Number of extensions: 4432
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 757
length of database: 10,358,551
effective HSP length: 16
effective length of query: 741
effective length of database: 10,329,639
effective search space: 7654262499
effective search space used: 7654262499
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)